The FAM considered dissolving the club, but gave Harimau Muda a second chance to participate in the 2008/09 Premier League season, but this time with more experienced, and better players. Harimau Muda proved to FAM that they did not deserve to be dissolved, as their Manager Ong Kim Swee led the Harimau Muda team into winning the 2008/09 Premier League season, losing only 2 matches on the way.
Harimau Muda B continued to participate half of the 2008–09 Premier League and the FA Cup with only reserves players, SSBJ football team players and mostly loaned age under 21 players from the President Cup, while the key players were with Harimau Muda A. with a combination of reserves players and loaned players, Harimau Muda B manage to play well in the league with the management of the assistant coach.
When Harimau Muda A returned to Malaysia, they combined and won the 2008–09 Premier League.
Football Association of Malaysia officially split the team into two teams after the 2008–09 Premier League finished in order to avoid another major schedule conflict.
Youth and Sports Minister Khairy Jamaluddin, former FAM's Deputy President has stated that the Football Association of Malaysia (FAM) must disband the Harimau Muda system, stating the Harimau Muda system is no longer relevant, it was not planned for the long term, and the state football associations should take the responsibility to groom potential players.[2] However, he does not know that Japan use the same method of Harimau Muda concept. Japan U22 also participate in a league which is J3 in their local scene. The difference is the Japanese did not have fixed players. They have 200 players registered and can be called up any time to duel in J3 matches. By doing so, the competition for U22 places is more fiery and open.